References¶
Bibliography for the scholarly citations used across the Explanation pages. Entries are anchored with stable IDs so they can be linked from elsewhere in the docs (references.md#key). Keys mirror those in thesis/references.bib.
[Aganj et al., 2010] — Aganj I, Lenglet C, Sapiro G, Yacoub E, Ugurbil K, Harel N. Reconstruction of the orientation distribution function in single- and multiple-shell q-ball imaging within constant solid angle. Magnetic Resonance in Medicine, 2010.
[Avants et al., 2008] — Avants BB, Epstein CL, Grossman M, Gee JC. Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain. Medical Image Analysis, 2008.
[Feldman et al., 2022] — Feldman EL, Goutman SA, Petri S, Mazzini L, Savelieff MG, Shaw PJ, Sobue G. Amyotrophic lateral sclerosis. The Lancet, 2022.
[Figley et al., 2022] — Figley CR, Uddin MN, Wong K, Kornelsen J, Puig J, Figley TD. Potential pitfalls of using fractional anisotropy, axial diffusivity, and radial diffusivity as biomarkers of cerebral white matter microstructure. Frontiers in Neuroscience, 2022.
[Garyfallidis et al., 2014] — Garyfallidis E, Brett M, Amirbekian B, Rokem A, van der Walt S, Descoteaux M, Nimmo-Smith I, and DIPY Contributors. DIPY, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics 8:8, 2014.
[Kazemzadeh et al., 2025] — Kazemzadeh A, Naseri P, Shirazinejad S, Abedi I. The role of b-value diffusion-weighted imaging in differentiating high-grade and low-grade brain tumors. Advanced Biomedical Research, 2025.
[Lazar, 2010] — Lazar M. Mapping brain anatomical connectivity using white matter tractography. NMR in Biomedicine, 2010.
[Maes et al., 2003 / Mattes et al., 2003] — Maes F, Vandermeulen D, Suetens P. Medical image registration using mutual information. Proc. IEEE, 2003. Mattes D, Haynor DR, Vesselle H, Lewellen TK, Eubank W. PET-CT image registration in the chest using free-form deformations. IEEE Trans Med Imaging, 2003.
[Reich et al., 2006] — Reich DS, Smith SA, Jones CK, Zackowski KM, van Zijl PCM, Calabresi PA, Mori S. Quantitative characterization of the corticospinal tract at 3T. American Journal of Neuroradiology, 2006.
[Roos, 2013] — Roos PM. Studies on metals in motor neuron disease. Karolinska Institutet, 2013.
[Sarica et al., 2017] — Sarica A, Cerasa A, Valentino P, Yeatman J, Trotta M, Barone S, Granata A, Nisticò R, Perrotta P, Pucci F, Quattrone A. The corticospinal tract profile in amyotrophic lateral sclerosis. Human Brain Mapping, 2017.
[Soares et al., 2013] — Soares JM, Marques P, Alves V, Sousa N. A hitchhiker's guide to diffusion tensor imaging. Frontiers in Neuroscience, 2013.
[Stejskal & Tanner, 1965] — Stejskal EO, Tanner JE. Spin diffusion measurements: spin echoes in the presence of a time-dependent field gradient. The Journal of Chemical Physics, 1965.
[Wakana et al., 2007] — Wakana S, Caprihan A, Panzenboeck MM, Fallon JH, Perry M, Gollub RL, Hua K, Zhang J, Jiang H, Dubey P, et al. Reproducibility of quantitative tractography methods applied to cerebral white matter. NeuroImage, 2007.
[Welniarz et al., 2017] — Welniarz Q, Dusart I, Roze E. The corticospinal tract: evolution, development, and human disorders. Developmental Neurobiology, 2017.
Notes on currency of citations¶
All entries above are sourced from thesis/references.bib. If you are adding new statements to docs that are not covered by an existing citation, either find a supporting entry there or mark the claim with [citation needed] inline so it can be sourced later — do not fabricate references. The current [citation needed] list (if any) is tracked in DOCUMENTATION_CHECKLIST.md.