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csttool Documentation

Tracking

alemnalo/csttool

`csttool.tracking`¶

Whole-brain deterministic tractography. The CLI counterpart is track.

from csttool.tracking.modules import run_tracking

run_tracking(
    nifti="preproc/dti_preproc.nii.gz",
    out="./tracking",
    fa_thr=0.2,
    seed_density=1,
    rng_seed=42,
)

`csttool.tracking` ¶

Whole-brain deterministic tractography (CSA-ODF).